miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|308672959|gb|DK462585.1|DK462585 GTCGGTTAGTTTCCATGGATCCGAAGCTGTTTCATCAGAGTTCAACTTGTCCTCAGGTGTCATTATCGCTGCTTTGTCTA
GAAACCTGAACTGGTCGGTGTATTTTAGGGTCAAGTTTGCATAGTTACGAGGAATGTGATTGTAAAGATCGACCCAAGGC
TGCTTGACCGGCTTCAATCCTCGTTTCGAGATCGCTGCTGCTATAACACGAGCTATACCAGCCAAGGGACTGCCCGAGGC
TTTCACTTTAACATAAAGTTTATGACCAGCGAAGAAAATGACGCAAGCCAAGAACATGAGACCCACGGGGATACTCAAAC
CGATGGTCCAGCTCACATTCGACTGGATATACACAACTAGCGTGAGCGAGATGATCTGCGCGAACGTGAAAGTGAAGAAG
TACCAGTTGAAGAAACTGTTGATTCCTTTCTTTCCTGATTCGGACTTGGGGTTGAACTGATCGGCACCGAACGCCAAGTT
ACACGGCCTGATACCACCAGCACCAACCACAAGAAGCGCTAAACCCAACATCAGAAACAAAATCTGGCCCGCACCTGGCC
CTTCGCATGAACTTTTTGTTCCACAAGGAGTCGGGTGCAGTCCCGGAACTGCTGCCGTGAGTAGTATCGCAAGCGATCCC
AGAAAACAAGCGACGACAGCAACACTGAGAGTCTTGTAGCGACCAAAGTAAGTGTCGCAGAGGAAAGCAGCGAGGAAAGT
GCCGAAGTTGATGGTGCCACTAAAGGCATTGATGATGGTTGCAGCTGTGTATTTCTTGAGGTTGAATACTTGAGTTAGGT
AGACGAGAAGGTTTGATAATGTCCCAATGATCCCAATCTTCTCAAAT




Most similar to sp|Q944G5|PTR44_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter
           At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=2
          Length = 636

 Score =  453 bits (1166), Expect = e-127
 Identities = 231/280 (82%), Positives = 239/280 (85%)
 Frame = -2

Query: 846 FEKIGIIGTLSNLLVYLTQVFNLKKYTAATIINAFSGTINFGTFLAAFLCDTYFGRYKTL 667
           FEK+GIIGTLSNLLV LT VFNLK YTAATIINAFSGTINFGTF+AAFLCDTYFGRYKTL
Sbjct: 77  FEKLGIIGTLSNLLVCLTSVFNLKSYTAATIINAFSGTINFGTFIAAFLCDTYFGRYKTL 136

Query: 666 SVAVVACFLGSLAILLTAAVPGLHPTPCGTKSSCEGPGAGQILFLMXXXXXXXXXXXGIR 487
           SVAV+ACFLGS  ILLTAA+P LHP  CG K SCEGP  GQILFL+           GIR
Sbjct: 137 SVAVIACFLGSFVILLTAAIPSLHPVACGNKISCEGPSVGQILFLLMGLGFLVVGAGGIR 196

Query: 486 PCNLAFGADQFNPKSESGKKGINSXXXXXXXXXXFAQIISLTLVVYIQSNVSWTIGLSIP 307
           PCNLAFGADQFNPKSESGKKGINS          FAQIISLT VVYIQSNVSWTIGL IP
Sbjct: 197 PCNLAFGADQFNPKSESGKKGINSFFNWYFFTFTFAQIISLTAVVYIQSNVSWTIGLIIP 256

Query: 306 VGLMFLACVIFFAGHKLYVKVKASGSPLAGIARVIAAAISKRGLKPVKQPWVDLYNHIPR 127
           V LMFLACVIFFAG +LYVKVKASGSPLAGIARVIAAAI KRGLKPVKQPWV+LYNHIP 
Sbjct: 257 VALMFLACVIFFAGDRLYVKVKASGSPLAGIARVIAAAIKKRGLKPVKQPWVNLYNHIPS 316

Query: 126 NYANLTLKYTDQFRFLDKAAIMTPEDKLNSDETASDPWKL 7
           NYAN TLKYTDQFRFLDKAAIMTPE+KLNSD TASDPWKL
Sbjct: 317 NYANTTLKYTDQFRFLDKAAIMTPEEKLNSDGTASDPWKL 356